The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line
Publication Type: Journal Articles (Refereed Article)
Year of Publication: 2009
Author(s): Suzuki, Harukazu, Forrest, Alistair Raymond Russell, Nimwegen, Erik van, Daub, Carsten O, Balwierz, Piotr J, Irvine, Katharine M, Lassmann, Timo, Ravasi, Timothy, Hasegawa, Yuki, Hoon, Michiel J L de, Katayama, Shintaro, Schroder, Kate, Carninci, Piero, Tomaru, Yasuhiro, Kanamori-Katayama, Mutsumi, Kubosaki, Atsutaka, Akalin, Altuna, Ando, Yoshinari, Arner, Erik, Asada, Maki, Asahara, Hiroshi, Bailey, Timothy, Bajic, Vladimir B, Bauer, Denis, Beckhouse, Anthony Gordon, Bertin, Nicolas, Björkegren, Johan, Brombacher, Frank, Bulger, Erika, Chalk, Alistair Morgan, Chiba, Joe, Cloonan, Nicol, Dawe, Adam, Dostie, Josee, Engström, Pär G, Essack, Magbubah, Faulkner, Geoffrey J, Fink, J Lynn, Fredman, David, Fujimori, Ko, Furuno, Masaaki, Gojobori, Takashi, Gough, Julian, Grimmond, Sean M, Gustafsson, Mika, Hashimoto, Megumi, Hashimoto, Takehiro, Hatakeyama, Mariko, Heinzel, Susanne, Hide, Winston, Hofmann, Oliver, Hörnquist, Michael, Huminiecki, Lukasz, Ikeo, Kazuho, Imamoto, Naoko, Inoue, Satoshi, Inoue, Yusuke, Ishihara, Ryoko, Iwayanagi, Takao, Jacobsen, Anders, Kaur, Mandeep, Kawaji, Hideya, Kerr, Markus C, Kimura, Ryuichiro, Kimura, Syuhei, Kimura, Yasumasa, Kitano, Hiroaki, Koga, Hisashi, Kojima, Toshio, Kondo, Shinji, Konno, Takeshi, Krogh, Anders, Kruger, Adele, Kumar, Ajit, Lenhard, Boris, Lennartsson, Andreas, Lindow, Morten, Lizio, Marina, MacPherson, Cameron, Maeda, Norihiro, Maher, Christopher A, Maqungo, Monique, Mar, Jessica, Matigian, Nicholas, Matsuda, Hideo, Mattick, John S, Meier, Stuart, Miyamoto, Sei, Miyamoto-Sato, Etsuko, Nakabayashi, Kazuhiko, Nakachi, Yutaka, Nakano, Mika, Nygaard, Sanne, Okayama, Toshitsugu, Okazaki, Yasushi, Okuda-Yabukami, Haruka, Orlando, Valerio, Wells, Christine, at, et

The regulated retrotransposon transcriptome of mammalian cells
Publication Type: Journal Articles (Refereed Article)
Year of Publication: 2009
Author(s): Faulkner, Geoffrey J, Kimura, Yasumasa, Daub, Carsten O, Wani, Shivangi, Plessy, Charles, Irvine, Katharine M, Schroder, Kate, Cloonan, Nicole, Steptoe, Anita L, Lassmann, Timo, Waki, Kazunori, Hornig, Nadine, Arakawa, Takahiro, Takahash, Hazuki, Kawai, Jun, Forrest, Alistair Raymond Russell, Suzuki, Harukazu, Hayashizaki, Yoshihide, Hume, David A, Orlando, Valerio, Grimmond, Sean M, Carninci, Piero

Tiny RNAs associated with transcription start sites in animals
Publication Type: Journal Articles (Refereed Article)
Year of Publication: 2009
Author(s): Taft, Ryan J, Glazov, Evgeny A, Cloonan, Nicole, Simons, Cas, Stephen, Stuart, Faulkner, Geoffrey J, Lassmann, Timo, Forrest, Alistair Raymond Russell, Grimmond, Sean M, Schroder, Kate, Irvine, Katharine, Arakawa, Takahiro, Nakamura, Mari, Kubosaki, Atsutaka, Hayashida, Kengo, Kawazu, Chika, Murata, Mitsuyoshi, Nishiyori, Hiromi, Fukuda, Shiro, Kawai, Jun, Daub, Carsten O, Hume, David A, Suzuki, Harukazu, Orlando, Valerio, Carninci, Piero, Hayashizaki, Yoshihide, Mattick, John S

The miR-17-5p microRNA is a key regulator of the G1/S phase cell cycle transition
Publication Type: Journal Articles (Refereed Article)
Year of Publication: 2008
Author(s): Cloonan, Nicole, Brown, Mellissa K, Steptoe, Anita L, Wani, Shivangi, Chan, Wei Ling, Forrest, Alistair Raymond Russell, Kolle, Gabriel, Gabrielli, Brian, Grimmond, Sean M

Genome-wide analysis of mammalian promoter architecture and evolution
Publication Type: Journal Articles (Refereed Article)
Year of Publication: 2006
Author(s): Carninci, Piero, Sandelin, Albin, Lenhard, Boris, Katayama, Shintaro, Shimokawa, Kazuro, Ponjavic, Jasmina, Semple, Colin A M, Taylor, Martin S, Engstrom, Par G, Frith, Martin C, Forrest, Alistair R R, Alkema, Wynand B, Tan, Sin Lam, Plessy, Charles, Kodzius, Rimanta, Ravasi, Timothy, Kasukawa, Tayeka, Fukuda, Shiro, Kanamori-Katayama, Mutsumi, Kitazume, Yayoi, kawaji, Hideya, Kai, Chikatoshi, Nakamura, Mari, Konno, Hideaki, Nakano, Kenji, Mottagui-Tabar, Salim, Arner, Peter, Chesi, Alessandra, Gustincich, Stehano, Persichetti, Francesca, Suzuki, Harukazi, Grimmond, Sean M, Wells, Christine, Orlando, Valerio, Wahlestedt, Claes, Liu, Edison T, Harbers, Matthias, Kawai, Jun, Bajic, Vladimir B, Hume, David A, Hayashizaki, Yoshihide

Alternate transcription of the Toll-like receptor signaling cascade
Publication Type: Journal Articles (Refereed Article)
Year of Publication: 2006
Author(s): Wells, Christine A., Chalk, Alistair M, Forrest, Alistair, Taylor, Darrin, Waddell, Nic, Schroder, Kate, Himes, S Roy, Faulkner, Geoffrey, Lo, Sandra, Kasukawa, Takeya, Kawaji, Hideya, Kai, Chikatoshi, Kawai, Jun, Katayama, Shintaro, Carninci, Piero, Hayashizaki, Yoshihide, Hume, David A, Grimmond, Sean M

Genome-wide review of transcriptional complexity in mouse protein kinases and phosphatases
Publication Type: Journal Articles (Refereed Article)
Year of Publication: 2006
Author(s): Forrest, Alistair RR, Taylor, Darrin F, Crowe, Mark L, Chalk, Alistair Morgan, Waddell, Nic J, Kolle, Gabriel, Faulkner, Geoffrey J, Kodzius, Rimantas, Katayama, Shintaro, Wells, Christine, Kai, Chikatoshi, Kawai, Jun, Carninci, Piero, Hayashizaki, Yoshihide, Grimmond, Sean M

PhosphoregDB: The tissue and sub-cellular distribution of mammalian protein kinases and phosphatases
Publication Type: Journal Articles (Refereed Article)
Year of Publication: 2006
Author(s): Forrest, Alistair Raymond Russell, Taylor, Darrin F, Fink, J Lynn, Gongora, M Milena, Flegg, Cameron, Teasdale, Rohan D, Suzuki, Harukazu, Kanamori, Mutsumi, Kai, Chikatoshi, Hayashizaki, Yoshihide, Grimmond, Sean M

Genome-wide review of transcriptional complexity in mouse protein kinases and phosphatases
Publication Type: Journal Articles (Refereed Article)
Year of Publication: 2006
Author(s): Forrest, Alistair RR, Taylor, Darrin F, Crowe, Mark L, Chalk, Alistair M, Waddell, Nick J, Kolle, Gabriel, Faulkner, Geoffrey J, Kodzius, Rimantas, Katayama, Shintaro, Wells, Christine, Kai, Chikatoshi, Kawai, Jun, Carninci, Piero, Hayashizaki, Yoshihide, Grimmond, Sean M

Phosphoregulators: Protein Kinases and Protein Phosphatases of Mouse
Publication Type: Journal Articles (Refereed Article)
Year of Publication: 2003
Author(s): Forrest, Alistair Raymond Russell, Ravasi, Timothy, Taylor, Darrin, Huber, Thomas, Hume, David A, Group, RIKEN GER, Members, GSL, Grimmond, Sean M

Systematic characterization of the zinc-finger-containing proteins in the mouse transcriptome
Publication Type: Journal Articles (Refereed Article)
Year of Publication: 2003
Author(s): Ravasi, Timothy, Huber, Thomas, Zavolan, Mihaela, Forrest, Alistair Raymond Russell, Gaasterland, Terry, Grimmond, Sean M, Group, RIKEN GER, Members, GSL, Hume, David A.

Novel genes regulated by Sonic Hedgehog in pluripotent mesenchymal cells
Publication Type: Journal Articles (Refereed Article)
Year of Publication: 2002
Author(s): Ingram, Wendy J, Wicking, Carol A, Grimmond, Sean M, Forrest, Alistair Raymond Russell, Wainwright, Brandon J